All of Us Publications

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO)

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO)

Dang Y, Li F, Hu X, Keloth VK, Zhang M, Fu S, Amith MF, Fan JW, Du J, Yu E, Liu H, Jiang X, Xu H, Tao C. J Am Med Inform Assoc. 2023 Jun 10:ocad096. doi: 10.1093/jamia/ocad096. Epub ahead of print. PMID: 37301740.

Social support and depression during a global crisis

Social support and depression during a global crisis

Choi, K.W., Lee, Y.H., Liu, Z. et al. Nat. Mental Health 1, 428–435 (2023). https://doi.org/10.1038/s44220-023-00078-0

Evaluating the use of blood pressure polygenic risk scores across race/ethnic background groups

Evaluating the use of blood pressure polygenic risk scores across race/ethnic background groups

Kurniansyah N, Goodman MO, Khan AT, Wang J, Feofanova E, Bis JC, Wiggins KL, Huffman JE, Kelly T, Elfassy T, Guo X, Palmas W, Lin HJ, Hwang SJ, Gao Y, Young K, Kinney GL, Smith JA, Yu B, Liu S, Wassertheil-Smoller S, Manson JE, Zhu X, Chen YI, Lee IT, Gu CC, Lloyd-Jones DM, Zöllner S, Fornage M, Kooperberg C, Correa A, Psaty BM, Arnett DK, Isasi CR, Rich SS, Kaplan RC, Redline S, Mitchell BD, Franceschini N, Levy D, Rotter JI, Morrison AC, Sofer T.  Nat Commun. 2023 Jun 2;14(1):3202. doi: 10.1038/s41467-023-38990-9. PMID: 37268629; PMCID: PMC10238525.

Declining autozygosity over time: An exploration in over 1 million individuals from three diverse cohorts

Declining autozygosity over time: An exploration in over 1 million individuals from three diverse cohorts

Colbert SMC, Wendt FR, Pathak GA, Helmer DA, Hauser ER, Keller MC, Polimanti R, Johnson EC.  Am J Hum Genet. 2023 Jun 1;110(6):1008-1014. doi: 10.1016/j.ajhg.2023.04.007. Epub 2023 May 12. PMID: 37178685; PMCID: PMC10257001.

Discordant calls across genotype discovery approaches elucidate variants with systematic errors

Discordant calls across genotype discovery approaches elucidate variants with systematic errors

Atkinson EG, Artomov M, Loboda AA, Rehm HL, MacArthur DG, Karczewski KJ, Neale B, Daly MJ.  Genome Res. 2023 May 30:gr.277908.123. doi: 10.1101/gr.277908.123. Epub ahead of print. PMID: 37253541.

Antibiotic prescribing by age, sex, race, and ethnicity for patients admitted to the hospital with community acquired bacterial pneumonia (CABP) in the All of Us database

Antibiotic prescribing by age, sex, race, and ethnicity for patients admitted to the hospital with community-acquired bacterial pneumonia (CABP) in the All of Us database 

Gilmore, C., Lee, G., Schmidt, S., & Frei, C. (2023). Journal of Clinical and Translational Science, 7(1), E132. doi:10.1017/cts.2023.567

Drug-Induced Liver Injury with Commonly Used Antibiotics in the All of Us Research Program

Drug-Induced Liver Injury with Commonly Used Antibiotics in the All of Us Research Program

Gu S, Rajendiran G, Forest K, Tran TC, Denny JC, Larson EA, Wilke RA. Clin Pharmacol Ther. 2023 Aug;114(2):404-412. doi: 10.1002/cpt.2930. Epub 2023 May 24. PMID: 37150941; PMCID: PMC10484299.

Higher Hospital Frailty Risk Score Is Associated With Increased Risk of Stroke: Observational and Genetic Analyses

Higher Hospital Frailty Risk Score Is Associated With Increased Risk of Stroke: Observational and Genetic Analyses

Renedo D, Acosta JN, Koo AB, Rivier C, Sujijantarat N, de Havenon A, Sharma R, Gill TM, Sheth KN, Falcone GJ, Matouk CC.  Stroke. 2023 Jun;54(6):1538-1547. doi: 10.1161/STROKEAHA.122.041891. Epub 2023 May 22. PMID: 37216451; PMCID: PMC10212531.

De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository

De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository

Pfaff ER, Girvin AT, Crosskey M, Gangireddy S, Master H, Wei WQ, Kerchberger VE, Weiner M, Harris PA, Basford M, Lunt C, Chute CG, Moffitt RA, Haendel M; N3C and RECOVER Consortia.  J Am Med Inform Assoc. 2023 May 22:ocad077. doi: 10.1093/jamia/ocad077. Epub ahead of print. PMID: 37218289.

Importance of missingness in baseline variables: A case study of the All of Us  Research Program

Importance of missingness in baseline variables: A case study of the All of Us Research Program

Cronin RM, Feng X, Sulieman L, Mapes B, Garbett S, Able A, Hale R, Couper MP, Sansbury H, Ahmedani BK, Chen Q.  PLoS One. 2023 May 18;18(5):e0285848. doi: 10.1371/journal.pone.0285848. PMID: 37200348.